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Accurate Predictions of Nonpolar Solvation Free Energies Require Explicit Consideration of Binding-Site Hydration

Continuum solvation methods are frequently used to increase the efficiency of computational methods to estimate free energies. In this paper, we have evaluated how well such methods estimate the nonpolar solvation free-energy change when a ligand binds to a protein. Three different continuum methods at various levels of approximation were considered, viz., the polarized continuum model (PCM), a me

Plant species diversity as a driver of early succession in abandoned fields: a multi-site approach

Succession is one of the most studied processes in ecology and succession theory provides strong predictability. However, few attempts have been made to influence the course of succession thereby testing the hypothesis that passing through one stage is essential before entering the next one. At each stage of succession ecosystem processes may be affected by the diversity of species present, but th

Autoimmune responses against the apo B-100 LDL receptor-binding site protect against arterial accumulation of lipids in LDL receptor deficient mice.

Background: Oxidation of LDL is associated with generation of autoantibodies against a large number of different aldehyde-modified peptide sequences in apo B-100. Autoantibodies recognizing peptide sequences in the LDL receptor-binding region of apo B-100 could potentially affect both cholesterol metabolism and atherosclerosis. The aim of the present study was to determine physiological effects of

The regulation of factor Va activity by activated protein C -Importance of the individual activated protein C cleavage sites in factor Va

Popular Abstract in Swedish Blodcirkulationen fungerar i kroppen som ett transport system för proteiner, syre och andra metaboliter. Blodet har den svåra uppgiften att vara flytande och samtidigt kunna koagulera på ställen där kärlet går sönder. Störning i denna balans leder till sjukdomar som hjärtinfarkt och blodpropp eller motsatsen svåra blödningar. Det protein som jag har studerat ingår vid